Learn to use Zebrafish Information Network, or ZFIN, a collection of data, tools, and resources on the zebrafish (Danio rerio), a popular model organism for developmental biology and genetics research. ZFIN integrates genes, gene expression data, mutant genotypes, transgenic strains, and sequence analysis tools with links to additional genomic, educational, and community resources. ZFIN is an essential resource that serves as the zebrafish model organism database and provides a centralized web-based interface and community resource for the laboratory use of zebrafish.
You will learn:
This tutorial is a part of the tutorial group Model organisms. You might find the other tutorials in the group interesting:
TAIR: The Arabidopsis Information Resource
Saccharomyces Genome Database (SGD): Saccharomyces Genome Database
WormBase: molecular and genetic information on Caenorhabditis elegans and related species
PhenomicDB: Phenotypes database
FlyBase: A resource for the genes, genome and molecular biology of Drosophila melanogaster and related species.
Mouse Genome Informatics (MGI): The Mouse Genome Informatics resource provides data, tools, and analyses for the mouse model organism.
Rat Genome Database (RGD): Rat Genome Database
Gramene: A resource on rice and other grass genomes
Genome Databases (euk) : Genomic databases or repositories primarily aimed at eukaryotic organisms. Some may contain prokaryotic data as well.
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Recent BioMed Central research articles citing this resource
Harty L Breanne et al., Defining the gene repertoire and spatiotemporal expression profiles of adhesion G protein-coupled receptors in zebrafish Non-human and non-rodent vertebrate genomics. BMC Genomics (2015) doi:10.1186/s12864-015-1296-8
Van Slyke E Ceri et al., The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. Journal of Biomedical Semantics (2014) doi:10.1186/2041-1480-5-12
Haendel A Melissa et al., Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. Journal of Biomedical Semantics (2014) doi:10.1186/2041-1480-5-21
Helsby A Matthew et al., CiteAb: a searchable antibody database that ranks antibodies by the number of times they have been cited Cell signaling pathways and networks. BMC Cell Biology (2014) doi:10.1186/1471-2121-15-6
Wu Calvin et al., Kcnq 1-5 (Kv7.1-5) potassium channel expression in the adult zebrafish Comparative physiology. BMC Physiology (2014) doi:10.1186/1472-6793-14-1