Learn to use Consensus, a pattern recognition program. This is a freely available web resource for finding motifs on DNA sequences. Consensus is based on a matrix consensus of overrepresented motifs in a set of sequences, coupled with a phylogenetic assessment of the statistical robustness of this motif. This is an extremely useful tool for promoter analysis and analysis of other sequence motifs as well.
You will learn:
This tutorial is a part of the tutorial group Motif analysis tools. You might find the other tutorials in the group interesting:
Melina II: A Web-Based Tool for Promoter Analysis
Gibbs Motif Sampler: A motif finder and analysis tool
MDscan: Motif Discovery scan for nucleotide and protein motifs
MEME Suite TOMTOM and GOMO algorithms: Motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences that you provide
MEME Suite GLAM2 Algorithm: Part of a motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences.
MEME Algorithm: Multiple Expectation Maximum for Motif Elicitation
MEME Suite Overview: Motif-based sequence analysis tools
World Tour of Genomics Resources 2: Great tools from around the world
Algorithms and Analysis : This category contains various tools that may help perform analysis of different genomics data types. This may include sequence alignment, large-scale or complex queries, motif finding, or comparative assessments.
Nucleotides : Tools that are primarily used in the storage, retrieval, or exploration of nucleotide-based data. Some tools may also involve protein sequence information.
Proteins : Tools that are primarily used in the storage, retrieval, or exploration of amino acid based data. Some tools may also involve nucleotide sequence information.
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